GenESyS Whole-Cell Modeling

Hybrid biochemical, metabolic, stochastic, and compartment-aware whole-cell modeling for prokaryotic and eukaryotic scenarios.

What it does

Deterministic biochemical networks, flux balance models, stochastic transcription/translation, growth, checkpoints, and division logic.

Executable simulator components

Assembly documentation

Modeling and architecture notes

Why it matters

This project page exists to keep the laboratory structure legible. It shows which parts are active research, which parts are documentation, and which parts are the supporting base behind the portal.

Related projects

Biological Systems Simulation Models for the Physical Synthesis of Digital Circuits in Bacteria

A research program on simulation models that connect biological system dynamics with the physical synthesis of digital circuits in bacterial hosts.

Open

BioCompLab Web Portal

The public and member-facing portal that organizes research, tools, courses, news, account access, and publication records.

Open

Biological Computing Foundations Course

A structured learning path that connects molecular biology, bioinformatics, systems biology, modeling, and synthetic biology.

Open

Publications and Provenance Catalog

A catalog that distinguishes papers, technical reports, datasets, software artifacts, and reproducibility packages.

Open

Reference Library

A curated archive of documents, papers, manuals, and research references used to improve the portal and project pages.

Open