Whole-cell modeling
- GenESyS Biological and Whole-Cell Modeling Documentation
- GenESyS Biological Modeling Technical Report
- Prokaryotic Whole-Cell Model Assembly Guide
- Eukaryotic Whole-Cell Model Assembly Guide
Reference library
Documents, papers, and source material behind the site.
This page turns the new `nonGit_AIassistant_referenceFiles` bundle into a visible editorial source map for the laboratory.
Research project record
- Research proposal in LaTeX
- Final technical report draft
- Lab papers folder with IEEE manuscript assets
Scientific background
- Systems biology, metabolic networks, gene regulation, and synthetic biology textbooks
- Bioinformatics and computational biology references
- Bioprocess, molecular biology, and origin-of-life references
Educational and archival material
- Course notes and course-linked source material
- Legacy paper and reference collections
- Older datasets and book-based references used to inform the portal
Curation rules
Reference entries should identify the document type and origin folder.
Published outputs should be separated from source notes and background reading.
Only curated files should be shown as catalog entries.
Archived or supporting material should be labeled as such.
How to use this library
The reference library supports the site’s editorial decisions, project descriptions, course content, and publication catalog without inventing metadata that has not been curated.
When the project is extended again, this page can become a searchable index or a document browser. For now, it is a curated map of the source base.
Review projects